Aiginiakos appeared in Gamma Ethniki's Northern Group in 1989–90,[1] but finished the season in the last place and relegated to the regional championship.[2]
In 2012, Aiginiakos lifted the Pieria FCA Cup in 2012 after beating AE Peristasi 1–0 in the final[3] and were supposed to play in the 2012–13 Delta Ethniki after having ended first in the A' Division of the local Pieria championships.[4] However, they took the place of fellow Pieria-based club Platamon Academy in the Football League 2 – the latter were Group 3 champions in the 2011–12 Delta Ethniki but could not obtain a professional licence to play in the 2012–13 Football League 2. They merged with Platamón CF and got the licence needed. In Football League 2 things were easy for the teams, as they knew that the top five teams would be promoted to Football League. Aiginiakos got the 4th place with ease, and were promoted to Football League for the first time in their history.[1]
^ abDermisis, D. (10 July 2012). "Επιστροφή" του Αιγινιακού στα "σαλόνια" [Return of Aiginiakos in the "big leagues"]. Pierikoi Antilaloi (in Greek). Archived from the original on 4 October 2013. Retrieved 21 October 2012. {{cite news}}: Unknown parameter |deadurl= ignored (|url-status= suggested) (help)
^ ab"2011-12 leagues". Pieria Football Clubs Association (in Greek). Archived from the original on 27 November 2012. Retrieved 21 October 2012. {{cite web}}: Unknown parameter |deadurl= ignored (|url-status= suggested) (help)
^"1995-96 leagues". Pieria Football Clubs Association (in Greek). Archived from the original on 27 November 2012. Retrieved 21 October 2012. {{cite web}}: Unknown parameter |deadurl= ignored (|url-status= suggested) (help)
^"1998-99 leagues". Pieria Football Clubs Association (in Greek). Archived from the original on 17 February 2013. Retrieved 21 October 2012. {{cite web}}: Unknown parameter |dead-url= ignored (|url-status= suggested) (help)
^"2001-02 leagues". Pieria Football Clubs Association (in Greek). Archived from the original on 17 February 2013. Retrieved 21 October 2012. {{cite web}}: Unknown parameter |dead-url= ignored (|url-status= suggested) (help)
^"2006-07 leagues". Pieria Football Clubs Association (in Greek). Archived from the original on 17 February 2013. Retrieved 21 October 2012. {{cite web}}: Unknown parameter |dead-url= ignored (|url-status= suggested) (help)