User talk:Andrew Su/Archive3
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8th ISCB Wikipedia Competition: entries closing soon!
 | Hello, this is to let you know that entries for the 8th ISCB Wikipedia Competition are closing soon! The ISCB aims to improve the communication of scientific knowledge to the public at large, and Wikipedia plays an increasingly important role in this communication; the ISCB Wikipedia Competition aims to improve the quality of Wikipedia articles relating to computational biology. Entries to the competition are open now; the competition closes on 17 May 2019. For students/trainees: Entry to the competition is open internationally to students and trainees of any level, both as individuals and as groups. Prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. As in previous years, the ISCB encourages competition entries for contributions to Wikipedia in any language. For teachers/trainers: Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/8th ISCB Wikipedia competition announcement. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Wikipedians who opt out of message delivery to your user talk page. |
Facto Post – Issue 23 – 30 April 2019
Facto Post – Issue 23 – 30 April 2019
 The Editor is Charles Matthews, for ContentMine. Please leave feedback for him, on his User talk page.
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 Talk of cloud computing draws a veil over hardware, but also, less obviously but more importantly, obscures such intellectual distinction as matters most in its use. Wikidata begins to allow tasks to be undertaken that were out of easy reach. The facility should not be taken as the real point. Coming in from another angle, the "executive decision" is more glamorous; but the "administrative decision" should be admired for its command of facts. Think of the attitudes ad fontes, so prevalent here on Wikipedia as "can you give me a source for that?", and being prepared to deal with complicated analyses into specified subcases. Impatience expressed as a disdain for such pedantry is quite understandable, but neither dirty data nor false dichotomies are at all good to have around. Issue 13 and Issue 21, respectively on WP:MEDRS and systematic reviews, talk about biomedical literature and computing tasks that would be of higher quality if they could be made more "administrative". For example, it is desirable that the decisions involved be consistent, explicable, and reproducible by non-experts from specified inputs. What gets clouded out is not impossibly hard to understand. You do need to put together the insights of functional programming, which is a doctrinaire and purist but clearcut approach, with the practicality of office software. Loopless computation can be conceived of as a seamless forward march of spreadsheet columns, each determined by the content of previous ones. Very well: to do a backward audit, when now we are talking about Wikidata, we rely on integrity of data and its scrupulous sourcing: and clearcut case analyses. The MEDRS example forces attention on purge attempts such as Beall's list.
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MediaWiki message delivery (talk) 11:27, 30 April 2019 (UTC)
8th ISCB Wikipedia competition: deadline extended!
| Hello, this is to let you know that the editing deadline for the 8th ISCB Wikipedia Competition has been extended to 28 June 2019. We encourage you to participate and make the most of this extended editing period! Remember, prizes of up to $500 will be awarded to the best contributions as chosen by a judging panel of experts; these will be awarded at the ISMB/ECCB conference in Basel, Switzerland in July 2019. For teachers/trainers: Please pass this invitation on to your students! We also encourage you to consider using the competition as part of an in-class assignment. Further details may be found at: Wikipedia:WikiProject Computational Biology/8th ISCB Wikipedia competition announcement. If you wish to opt-out of future mailings from WikiProject Computational Biology, please remove yourself from the mailing list or alternatively to opt-out of all massmessage mailings, you may add Category:Wikipedians who opt out of message delivery to your user talk page. |
Facto Post – Issue 24 – 17 May 2019
Facto Post – Issue 24 – 17 May 2019 The Editor is Charles Matthews, for ContentMine. Please leave feedback for him, on his User talk page.
To subscribe to Facto Post go to Wikipedia:Facto Post mailing list. For the ways to unsubscribe, see the footer.
Two dozen issues, and this may be the last, a valediction at least for a while. It's time for a two-year summation of ContentMine projects involving TDM (text and data mining). Wikidata and now Structured Data on Commons represent the overlap of Wikimedia with the Semantic Web. This common ground is helping to convert an engineering concept into a movement. TDM generally has little enough connection with the Semantic Web, being instead in the orbit of machine learning which is no respecter of the semantic. Don't break a taboo by asking bots "and what do you mean by that?" The ScienceSource project innovates in TDM, by storing its text mining results in a Wikibase site. It strives for compliance of its fact mining, on drug treatments of diseases, with an automated form of the relevant Wikipedia referencing guideline MEDRS. Where WikiFactMine set up an API for reuse of its results, ScienceSource has a SPARQL query service, with look-and-feel exactly that of Wikidata's at query.wikidata.org. It also now has a custom front end, and its content can be federated, in other words used in data mashups: it is one of over 50 sites that can federate with Wikidata. The human factor comes to bear through the front end, which combines a link to the HTML version of a paper, text mining results organised in drug and disease columns, and a SPARQL display of nearby drug and disease terms. Much software to develop and explain, so little time! Rather than telling the tale, Facto Post brings you ScienceSource links, starting from the how-to video, lower right.
The review tool requires a log in on sciencesource.wmflabs.org, and an OAuth permission (bottom of a review page) to operate. It can be used in simple and more advanced workflows. Examples of queries for the latter are at d:Wikidata_talk:ScienceSource project/Queries#SS_disease_list and d:Wikidata_talk:ScienceSource_project/Queries#NDF-RT issue. Please be aware that this is a research project in development, and may have outages for planned maintenance. That will apply for the next few days, at least. The ScienceSource wiki main page carries information on practical matters. Email is not enabled on the wiki: use site mail here to Charles Matthews in case of difficulty, or if you need support. Further explanatory videos will be put into commons:Category:ContentMine videos. If you wish to receive no further issues of Facto Post, please remove your name from our mailing list. Alternatively, to opt out of all massmessage mailings, you may add Category:Wikipedians who opt out of message delivery to your user talk page.
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MediaWiki message delivery (talk) 18:52, 17 May 2019 (UTC)
Genewiki reviews on wikidata
Hi Andrew. I've been thinking about how to encode the information linking genewiki reviews to their relevant WP pages. Taker a look at wikidata:Q28272095#P793 and let me know what you think! Eventually I also hope to update the relevant items relating to the early RNA Biology publications that updated RNA family articles. T.Shafee(Evo&Evo)talk 09:15, 3 March 2020 (UTC)
- Seems like a reasonable modeling of the link. If you have a use case for how those links would be useful, go for it! Best, Andrew Su (talk) 17:05, 3 March 2020 (UTC)
Shout-out for the Gene Wiki project and your protein-related wiki edits specifically
as per this paper. -- Daniel Mietchen (talk) 20:51, 12 March 2020 (UTC)
- Cool, thanks for the pointer! Best, Andrew Su (talk) 20:56, 12 March 2020 (UTC)
Nomination for deletion of Template:SWL
Template:SWL has been nominated for deletion. You are invited to comment on the discussion at the template's entry on the Templates for discussion page. – Thjarkur (talk) 19:35, 15 April 2020 (UTC)
Speedy deletion nomination of Category:SWL/PPI
A tag has been placed on Category:SWL/PPI requesting that it be speedily deleted from Wikipedia. This has been done under section C1 of the criteria for speedy deletion, because the category has been empty for seven days or more and is not a disambiguation category, a category redirect, a featured topics category, under discussion at Categories for discussion, or a project category that by its nature may become empty on occasion.
If you think this page should not be deleted for this reason, you may contest the nomination by visiting the page and clicking the button labelled "Contest this speedy deletion". This will give you the opportunity to explain why you believe the page should not be deleted. However, be aware that once a page is tagged for speedy deletion, it may be deleted without delay. Please do not remove the speedy deletion tag from the page yourself, but do not hesitate to add information in line with Wikipedia's policies and guidelines. UnitedStatesian (talk) 05:09, 17 April 2020 (UTC)
Speedy deletion nomination of Category:SWL/produces
A tag has been placed on Category:SWL/produces requesting that it be speedily deleted from Wikipedia. This has been done under section C1 of the criteria for speedy deletion, because the category has been empty for seven days or more and is not a disambiguation category, a category redirect, a featured topics category, under discussion at Categories for discussion, or a project category that by its nature may become empty on occasion.
If you think this page should not be deleted for this reason, you may contest the nomination by visiting the page and clicking the button labelled "Contest this speedy deletion". This will give you the opportunity to explain why you believe the page should not be deleted. However, be aware that once a page is tagged for speedy deletion, it may be deleted without delay. Please do not remove the speedy deletion tag from the page yourself, but do not hesitate to add information in line with Wikipedia's policies and guidelines. Liz Read! Talk! 16:08, 17 April 2020 (UTC)
Hi Dr. Su.
Figured I'd let you know I sent you an email. 
Seppi333 (Insert 2¢) 00:53, 18 September 2020 (UTC)
Fixed your talk page archiving
Hi! I took the liberty of fixing the auto-archiving settings at the top of this page. --rchard2scout (talk) 14:08, 4 February 2021 (UTC)